J5_8EVS_003

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8EVS|1|A1|U|719, 8EVS|1|A1|A|784, 8EVS|1|A1|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EVS_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.068

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EVS|1|A1|C|675
8EVS|1|A1|G|676
8EVS|1|A1|A|677
8EVS|1|A1|G|678
*
8EVS|1|A1|C|702
8EVS|1|A1|G|703
8EVS|1|A1|U|704
8EVS|1|A1|A|705
8EVS|1|A1|A|706
*
8EVS|1|A1|U|713
8EVS|1|A1|G|714
8EVS|1|A1|A|715
8EVS|1|A1|A|716
8EVS|1|A1|C|717
8EVS|1|A1|G|718
8EVS|1|A1|U|719
8EVS|1|A1|A|720
8EVS|1|A1|G|721
*
8EVS|1|A1|C|749
8EVS|1|A1|G|750
8EVS|1|A1|A|751
*
8EVS|1|A1|U|782
8EVS|1|A1|A|783
8EVS|1|A1|A|784
8EVS|1|A1|G|785
8EVS|1|A1|A|786
8EVS|1|A1|G|787

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AL

60S ribosomal protein L13-A

Chain AQ

60S ribosomal protein L18-A

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1

Chain Ai

60S ribosomal protein L36-A