J5_8EVT_003

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8EVT|1|A1|U|719, 8EVT|1|A1|A|784, 8EVT|1|A1|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EVT_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0544

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EVT|1|A1|C|675
8EVT|1|A1|G|676
8EVT|1|A1|A|677
8EVT|1|A1|G|678
*
8EVT|1|A1|C|702
8EVT|1|A1|G|703
8EVT|1|A1|U|704
8EVT|1|A1|A|705
8EVT|1|A1|A|706
*
8EVT|1|A1|U|713
8EVT|1|A1|G|714
8EVT|1|A1|A|715
8EVT|1|A1|A|716
8EVT|1|A1|C|717
8EVT|1|A1|G|718
8EVT|1|A1|U|719
8EVT|1|A1|A|720
8EVT|1|A1|G|721
*
8EVT|1|A1|C|749
8EVT|1|A1|G|750
8EVT|1|A1|A|751
*
8EVT|1|A1|U|782
8EVT|1|A1|A|783
8EVT|1|A1|A|784
8EVT|1|A1|G|785
8EVT|1|A1|A|786
8EVT|1|A1|G|787

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AL

60S ribosomal protein L13-A

Chain AQ

60S ribosomal protein L18-A

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1

Chain Ai

60S ribosomal protein L36-A