J5_8EWC_003

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8EWC|1|A1|U|719, 8EWC|1|A1|A|784, 8EWC|1|A1|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EWC_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0655

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8EWC|1|A1|C|675
8EWC|1|A1|G|676
8EWC|1|A1|A|677
8EWC|1|A1|G|678
*
8EWC|1|A1|C|702
8EWC|1|A1|G|703
8EWC|1|A1|U|704
8EWC|1|A1|A|705
8EWC|1|A1|A|706
*
8EWC|1|A1|U|713
8EWC|1|A1|G|714
8EWC|1|A1|A|715
8EWC|1|A1|A|716
8EWC|1|A1|C|717
8EWC|1|A1|G|718
8EWC|1|A1|U|719
8EWC|1|A1|A|720
8EWC|1|A1|G|721
*
8EWC|1|A1|C|749
8EWC|1|A1|G|750
8EWC|1|A1|A|751
*
8EWC|1|A1|U|782
8EWC|1|A1|A|783
8EWC|1|A1|A|784
8EWC|1|A1|G|785
8EWC|1|A1|A|786
8EWC|1|A1|G|787

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AL

60S ribosomal protein L13-A

Chain AQ

60S ribosomal protein L18-A

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1

Chain Ai

60S ribosomal protein L36-A