J5_8EYQ_003

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8EYQ|1|A|A|109, 8EYQ|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EYQ_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1137

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8EYQ|1|A|C|58
8EYQ|1|A|A|59
8EYQ|1|A|A|60
8EYQ|1|A|G|61
*
8EYQ|1|A|C|106
8EYQ|1|A|G|107
8EYQ|1|A|G|108
8EYQ|1|A|A|109
8EYQ|1|A|C|110
8EYQ|1|A|G|111
8EYQ|1|A|G|112
8EYQ|1|A|G|113
*
8EYQ|1|A|C|314
8EYQ|1|A|A|315
8EYQ|1|A|C|316
*
8EYQ|1|A|G|337
8EYQ|1|A|A|338
8EYQ|1|A|C|339
*
8EYQ|1|A|G|350
8EYQ|1|A|G|351
8EYQ|1|A|C|352
8EYQ|1|A|A|353
8EYQ|1|A|G|354

Current chains

Chain A

16S_rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20