J5_8FC2_018

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FC2_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0718

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8FC2|1|2a|C|36
8FC2|1|2a|U|37
8FC2|1|2a|G|38
8FC2|1|2a|G|39
*
8FC2|1|2a|C|403
8FC2|1|2a|U|404
8FC2|1|2a|U|405
8FC2|1|2a|G|406
*
8FC2|1|2a|C|436
8FC2|1|2a|U|437
8FC2|1|2a|G|438
8FC2|1|2a|A|439
8FC2|1|2a|A|441
8FC2|1|2a|C|442
*
8FC2|1|2a|G|492
8FC2|1|2a|G|493
8FC2|1|2a|U|494
8FC2|1|2a|A|495
8FC2|1|2a|A|496
8FC2|1|2a|U|498
8FC2|1|2a|A|499
8FC2|1|2a|G|500
*
8FC2|1|2a|C|545
8FC2|1|2a|G|546
8FC2|1|2a|A|547
8FC2|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12