J5_8FC5_001

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8FC5|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FC5_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.041

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FC5|1|1A|C|47
8FC5|1|1A|G|48
8FC5|1|1A|A|49
8FC5|1|1A|U|50
8FC5|1|1A|G|51
8FC5|1|1A|A|52
8FC5|1|1A|A|53
8FC5|1|1A|G|54
*
8FC5|1|1A|C|116
8FC5|1|1A|G|117
8FC5|1|1A|A|118
8FC5|1|1A|A|119
8FC5|1|1A|U|120
8FC5|1|1A|G|121
*
8FC5|1|1A|C|130
8FC5|1|1A|G|131
*
8FC5|1|1A|C|148
8FC5|1|1A|A|149
8FC5|1|1A|C|150
*
8FC5|1|1A|G|176
8FC5|1|1A|G|177
8FC5|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23