J5_8FIZ_003
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8FIZ|1|AA|A|109, 8FIZ|1|AA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FIZ_003 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1092
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8FIZ|1|AA|C|58
8FIZ|1|AA|A|59
8FIZ|1|AA|A|60
8FIZ|1|AA|G|61
*
8FIZ|1|AA|C|106
8FIZ|1|AA|G|107
8FIZ|1|AA|G|108
8FIZ|1|AA|A|109
8FIZ|1|AA|C|110
8FIZ|1|AA|G|111
8FIZ|1|AA|G|112
8FIZ|1|AA|G|113
*
8FIZ|1|AA|C|314
8FIZ|1|AA|A|315
8FIZ|1|AA|C|316
*
8FIZ|1|AA|G|337
8FIZ|1|AA|A|338
8FIZ|1|AA|C|339
*
8FIZ|1|AA|G|350
8FIZ|1|AA|G|351
8FIZ|1|AA|C|352
8FIZ|1|AA|A|353
8FIZ|1|AA|G|354
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AB
- 30S ribosomal protein S20
- Chain AO
- 30S ribosomal protein S16
- Chain BS
- 50S ribosomal protein L14
- Chain BW
- 50S ribosomal protein L19
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