J5_8FL9_004
3D structure
- PDB id
- 8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8FL9|1|L3|G|3922, 8FL9|1|L3|A|4376, 8FL9|1|L3|G|4377, 8FL9|1|L3|A|4378, 8FL9|1|L3|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FL9_004 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.31
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8FL9|1|L3|PSU|3920
8FL9|1|L3|U|3921
8FL9|1|L3|G|3922
8FL9|1|L3|A|3923
*
8FL9|1|L3|U|4188
8FL9|1|L3|U|4189
8FL9|1|L3|U|4190
8FL9|1|L3|G|4191
*
8FL9|1|L3|C|4204
8FL9|1|L3|A|4205
*
8FL9|1|L3|OMU|4227
8FL9|1|L3|OMG|4228
*
8FL9|1|L3|C|4375
8FL9|1|L3|A|4376
8FL9|1|L3|G|4377
8FL9|1|L3|A|4378
8FL9|1|L3|A|4379
8FL9|1|L3|A|4380
8FL9|1|L3|A|4381
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L9
- 60S ribosomal protein L15
- Chain LB
- 60S ribosomal protein L18
- Chain LE
- 60S ribosomal protein L21
- Chain LK
- 60S ribosomal protein L27a
- Chain LV
- 60S ribosomal protein L36a
- Chain SF
- 60S ribosomal protein L8
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