J5_8FOM_009
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8FOM|1|RA|U|2076, 8FOM|1|RA|G|2428, 8FOM|1|RA|G|2429, 8FOM|1|RA|A|2430, 8FOM|1|RA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FOM_009 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0847
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FOM|1|RA|U|2074
8FOM|1|RA|U|2075
8FOM|1|RA|U|2076
8FOM|1|RA|A|2077
*
8FOM|1|RA|U|2243
8FOM|1|RA|U|2244
8FOM|1|RA|U|2245
8FOM|1|RA|G|2246
*
8FOM|1|RA|C|2258
8FOM|1|RA|G|2259
*
8FOM|1|RA|C|2281
8FOM|1|RA|G|2282
*
8FOM|1|RA|C|2427
8FOM|1|RA|G|2428
8FOM|1|RA|G|2429
8FOM|1|RA|A|2430
8FOM|1|RA|U|2431
8FOM|1|RA|A|2432
8FOM|1|RA|A|2433
8FOM|1|RA|A|2434
8FOM|1|RA|A|2435
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain R1
- 50S ribosomal protein L28
- Chain R6
- 50S ribosomal protein L33
- Chain RD
- 50S ribosomal protein L2
- Chain RP
- 50S ribosomal protein L15
Coloring options: