J5_8FON_010

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FON_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0766

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8FON|1|XA|C|36
8FON|1|XA|U|37
8FON|1|XA|G|38
8FON|1|XA|G|39
*
8FON|1|XA|C|403
8FON|1|XA|U|404
8FON|1|XA|U|405
8FON|1|XA|G|406
*
8FON|1|XA|C|436
8FON|1|XA|U|437
8FON|1|XA|G|438
8FON|1|XA|A|439
8FON|1|XA|A|440
8FON|1|XA|C|442
*
8FON|1|XA|G|492
8FON|1|XA|G|493
8FON|1|XA|U|494
8FON|1|XA|A|495
8FON|1|XA|A|496
8FON|1|XA|U|497
8FON|1|XA|A|498
8FON|1|XA|G|500
*
8FON|1|XA|C|545
8FON|1|XA|G|546
8FON|1|XA|A|547
8FON|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12