J5_8FR8_001

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8FR8|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FR8_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.073

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8FR8|1|A|C|44
8FR8|1|A|G|45
8FR8|1|A|A|46
8FR8|1|A|U|47
8FR8|1|A|G|48
8FR8|1|A|A|49
8FR8|1|A|A|50
8FR8|1|A|G|51
*
8FR8|1|A|C|113
8FR8|1|A|G|114
8FR8|1|A|A|115
8FR8|1|A|A|116
8FR8|1|A|U|117
8FR8|1|A|G|118
*
8FR8|1|A|C|127
8FR8|1|A|G|128
*
8FR8|1|A|C|147
8FR8|1|A|A|148
8FR8|1|A|C|149
*
8FR8|1|A|G|175
8FR8|1|A|G|176
8FR8|1|A|G|177

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 0

50S ribosomal protein L34

Chain Z

50S ribosomal protein L23