J5_8FRU_001

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGG*CGACGAAG*CGAACG*CG*CGC

Length

22 nucleotides

Bulged bases

8FRU|1|4|C|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|1|G|18
8FRU|1|1|G|19
8FRU|1|1|G|20
*
8FRU|1|4|C|35
8FRU|1|4|G|36
8FRU|1|4|A|37
8FRU|1|4|C|38
8FRU|1|4|G|39
8FRU|1|4|A|40
8FRU|1|4|A|41
8FRU|1|4|G|42
*
8FRU|1|4|C|101
8FRU|1|4|G|102
8FRU|1|4|A|103
8FRU|1|4|A|104
8FRU|1|4|C|105
8FRU|1|4|G|106
*
8FRU|1|4|C|112
8FRU|1|4|G|113
*
8FRU|1|4|C|120
8FRU|1|4|G|121
8FRU|1|4|C|122

Current chains

Chain 1

28S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain N

60S ribosomal protein eL15

Chain X

60S ribosomal protein uL23

Chain h

60S ribosomal protein uL29

Chain j

60S ribosomal protein eL37