J5_8FRU_002
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGAGCC*GGGC*GUUG*CC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8FRU|1|1|U|1122
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FRU_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1195
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8FRU|1|1|G|404
8FRU|1|1|G|405
8FRU|1|1|A|406
8FRU|1|1|G|407
8FRU|1|1|C|408
8FRU|1|1|C|409
*
8FRU|1|1|G|514
8FRU|1|1|G|515
8FRU|1|1|G|516
8FRU|1|1|C|517
*
8FRU|1|1|G|656
8FRU|1|1|U|657
8FRU|1|1|U|658
8FRU|1|1|G|659
*
8FRU|1|1|C|1060
8FRU|1|1|C|1061
*
8FRU|1|1|G|1117
8FRU|1|1|C|1118
8FRU|1|1|A|1119
8FRU|1|1|G|1120
8FRU|1|1|A|1121
8FRU|1|1|U|1122
8FRU|1|1|C|1123
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S rRNA
- Chain C
- 60S ribosomal protein uL4
- Chain L
- 60S ribosomal protein eL13
- Chain N
- 60S ribosomal protein eL15
- Chain a
- 60S ribosomal protein uL15
- Chain e
- 60S ribosomal protein eL32
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