J5_8FRU_005
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACGCGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8FRU|1|1|G|1603, 8FRU|1|1|G|1608
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FRU_005 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0987
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8FRU|1|1|G|1536
8FRU|1|1|C|1537
8FRU|1|1|A|1538
8FRU|1|1|A|1539
8FRU|1|1|G|1540
8FRU|1|1|C|1541
8FRU|1|1|C|1542
8FRU|1|1|G|1543
8FRU|1|1|G|1544
*
8FRU|1|1|U|1568
8FRU|1|1|G|1569
*
8FRU|1|1|U|1596
8FRU|1|1|G|1597
*
8FRU|1|1|C|1601
8FRU|1|1|G|1602
8FRU|1|1|G|1603
8FRU|1|1|A|1604
8FRU|1|1|C|1605
8FRU|1|1|G|1606
8FRU|1|1|C|1607
8FRU|1|1|G|1608
8FRU|1|1|G|1609
*
8FRU|1|1|C|1817
8FRU|1|1|A|1818
8FRU|1|1|C|1819
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein uL3
- Chain R
- 60S ribosomal protein eL19
- Chain V
- 60S ribosomal protein uL14
- Chain W
- 60S ribosomal protein eL24
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