J5_8FRU_006
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8FRU|1|1|A|1890, 8FRU|1|1|A|2238, 8FRU|1|1|U|2294, 8FRU|1|1|G|2295, 8FRU|1|1|U|2296, 8FRU|1|1|U|2398, 8FRU|1|1|U|2399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FRU|1|1|A|1885
8FRU|1|1|G|1886
8FRU|1|1|A|1887
8FRU|1|1|A|1888
8FRU|1|1|G|1889
8FRU|1|1|A|1890
8FRU|1|1|C|1891
8FRU|1|1|C|1892
*
8FRU|1|1|G|2236
8FRU|1|1|G|2237
8FRU|1|1|A|2238
8FRU|1|1|U|2239
8FRU|1|1|A|2240
8FRU|1|1|A|2241
8FRU|1|1|C|2242
8FRU|1|1|U|2243
8FRU|1|1|G|2244
*
8FRU|1|1|C|2288
8FRU|1|1|U|2289
8FRU|1|1|U|2290
8FRU|1|1|C|2291
8FRU|1|1|G|2292
8FRU|1|1|A|2293
8FRU|1|1|U|2294
8FRU|1|1|G|2295
8FRU|1|1|U|2296
8FRU|1|1|C|2297
*
8FRU|1|1|G|2371
8FRU|1|1|G|2372
8FRU|1|1|U|2373
8FRU|1|1|U|2374
8FRU|1|1|U|2375
8FRU|1|1|A|2376
8FRU|1|1|G|2377
*
8FRU|1|1|U|2395
8FRU|1|1|A|2396
8FRU|1|1|G|2397
8FRU|1|1|U|2398
8FRU|1|1|U|2399
8FRU|1|1|U|2400
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain B
- 60S ribosomal protein uL3
- Chain C
- 60S ribosomal protein uL4
- Chain b
- 60S ribosomal protein eL29
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