J5_8FRU_007
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UUGA*UUCG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8FRU|1|1|G|1904, 8FRU|1|1|A|2220, 8FRU|1|1|G|2221, 8FRU|1|1|A|2222, 8FRU|1|1|A|2223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FRU_007 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.271
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FRU|1|1|U|1902
8FRU|1|1|U|1903
8FRU|1|1|G|1904
8FRU|1|1|A|1905
*
8FRU|1|1|U|2033
8FRU|1|1|U|2034
8FRU|1|1|C|2035
8FRU|1|1|G|2036
*
8FRU|1|1|C|2049
8FRU|1|1|G|2050
*
8FRU|1|1|C|2072
8FRU|1|1|G|2073
*
8FRU|1|1|C|2219
8FRU|1|1|A|2220
8FRU|1|1|G|2221
8FRU|1|1|A|2222
8FRU|1|1|A|2223
8FRU|1|1|A|2224
8FRU|1|1|A|2225
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain N
- 60S ribosomal protein eL15
- Chain Q
- 60S ribosomal protein eL18
- Chain T
- 60S ribosomal protein eL21
- Chain a
- 60S ribosomal protein uL15
- Chain b
- 60S ribosomal protein eL29
- Chain o
- 60S ribosomal protein eL42
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