J5_8FZF_006
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8FZF|1|A|U|2076, 8FZF|1|A|G|2428, 8FZF|1|A|G|2429, 8FZF|1|A|A|2430, 8FZF|1|A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FZF_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1131
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FZF|1|A|U|2074
8FZF|1|A|U|2075
8FZF|1|A|U|2076
8FZF|1|A|A|2077
*
8FZF|1|A|U|2243
8FZF|1|A|U|2244
8FZF|1|A|U|2245
8FZF|1|A|G|2246
*
8FZF|1|A|C|2258
8FZF|1|A|U|2259
*
8FZF|1|A|A|2281
8FZF|1|A|G|2282
*
8FZF|1|A|C|2427
8FZF|1|A|G|2428
8FZF|1|A|G|2429
8FZF|1|A|A|2430
8FZF|1|A|U|2431
8FZF|1|A|A|2432
8FZF|1|A|A|2433
8FZF|1|A|A|2434
8FZF|1|A|A|2435
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL33
- Chain 7
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain N
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L28
- Chain x
- Transfer RNA; tRNA
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