3D structure

PDB id
8FZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
8FZI|1|a|A|60, 8FZI|1|a|A|109, 8FZI|1|a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8FZI_009 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0961
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_58574.1
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8FZI|1|a|C|58
8FZI|1|a|A|59
8FZI|1|a|A|60
8FZI|1|a|G|61
*
8FZI|1|a|C|106
8FZI|1|a|G|107
8FZI|1|a|G|108
8FZI|1|a|A|109
8FZI|1|a|C|110
8FZI|1|a|G|111
8FZI|1|a|G|112
8FZI|1|a|G|113
*
8FZI|1|a|C|314
8FZI|1|a|A|315
8FZI|1|a|C|316
*
8FZI|1|a|G|337
8FZI|1|a|A|338
8FZI|1|a|C|339
*
8FZI|1|a|G|350
8FZI|1|a|G|351
8FZI|1|a|C|352
8FZI|1|a|A|353
8FZI|1|a|G|354

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L14
Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20
Chain v
Peptide chain release factor RF3

Coloring options:


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