J5_8G29_013

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8G29|1|2A|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G29_013 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.0529

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8G29|1|2A|C|584
8G29|1|2A|G|585
8G29|1|2A|A|586
8G29|1|2A|C|587
8G29|1|2A|U|588
8G29|1|2A|C|589
*
8G29|1|2A|G|668
8G29|1|2A|G|669
8G29|1|2A|A|670
8G29|1|2A|C|671
*
8G29|1|2A|G|809
8G29|1|2A|U|810
8G29|1|2A|U|811
8G29|1|2A|C|812
*
8G29|1|2A|G|1195
8G29|1|2A|C|1196
*
8G29|1|2A|G|1250
8G29|1|2A|C|1251
8G29|1|2A|G|1252
8G29|1|2A|A|1253
8G29|1|2A|A|1254
8G29|1|2A|U|1255
8G29|1|2A|G|1256

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21