J5_8G2B_018

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G2B_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0738

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8G2B|1|2a|C|36
8G2B|1|2a|U|37
8G2B|1|2a|G|38
8G2B|1|2a|G|39
*
8G2B|1|2a|C|403
8G2B|1|2a|U|404
8G2B|1|2a|U|405
8G2B|1|2a|G|406
*
8G2B|1|2a|C|436
8G2B|1|2a|U|437
8G2B|1|2a|G|438
8G2B|1|2a|A|439
8G2B|1|2a|A|441
8G2B|1|2a|C|442
*
8G2B|1|2a|G|492
8G2B|1|2a|G|493
8G2B|1|2a|U|494
8G2B|1|2a|A|495
8G2B|1|2a|A|496
8G2B|1|2a|U|498
8G2B|1|2a|A|499
8G2B|1|2a|G|500
*
8G2B|1|2a|C|545
8G2B|1|2a|G|546
8G2B|1|2a|A|547
8G2B|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12