J5_8G2C_010

3D structure

PDB id

8G2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8G2C|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G2C_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0557

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8G2C|1|2A|C|47
8G2C|1|2A|G|48
8G2C|1|2A|A|49
8G2C|1|2A|U|50
8G2C|1|2A|G|51
8G2C|1|2A|A|52
8G2C|1|2A|A|53
8G2C|1|2A|G|54
*
8G2C|1|2A|C|116
8G2C|1|2A|G|117
8G2C|1|2A|A|118
8G2C|1|2A|A|119
8G2C|1|2A|U|120
8G2C|1|2A|G|121
*
8G2C|1|2A|C|130
8G2C|1|2A|G|131
*
8G2C|1|2A|C|148
8G2C|1|2A|A|149
8G2C|1|2A|C|150
*
8G2C|1|2A|G|176
8G2C|1|2A|G|177
8G2C|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23