J5_8G2D_001

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8G2D|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G2D_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0514

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8G2D|1|1A|C|47
8G2D|1|1A|G|48
8G2D|1|1A|A|49
8G2D|1|1A|U|50
8G2D|1|1A|G|51
8G2D|1|1A|A|52
8G2D|1|1A|A|53
8G2D|1|1A|G|54
*
8G2D|1|1A|C|116
8G2D|1|1A|G|117
8G2D|1|1A|A|118
8G2D|1|1A|A|119
8G2D|1|1A|U|120
8G2D|1|1A|G|121
*
8G2D|1|1A|C|130
8G2D|1|1A|G|131
*
8G2D|1|1A|C|148
8G2D|1|1A|A|149
8G2D|1|1A|C|150
*
8G2D|1|1A|G|176
8G2D|1|1A|G|177
8G2D|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23