J5_8G2U_001

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8G2U|1|B|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G2U_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0545

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8G2U|1|B|C|47
8G2U|1|B|G|48
8G2U|1|B|A|49
8G2U|1|B|U|50
8G2U|1|B|G|51
8G2U|1|B|A|52
8G2U|1|B|A|53
8G2U|1|B|G|54
*
8G2U|1|B|C|116
8G2U|1|B|G|117
8G2U|1|B|A|118
8G2U|1|B|A|119
8G2U|1|B|U|120
8G2U|1|B|G|121
*
8G2U|1|B|C|130
8G2U|1|B|A|131
*
8G2U|1|B|U|148
8G2U|1|B|A|149
8G2U|1|B|U|150
*
8G2U|1|B|A|176
8G2U|1|B|G|177
8G2U|1|B|G|178

Current chains

Chain B

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34