J5_8G31_001

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8G31|1|B|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G31_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0618

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8G31|1|B|C|47
8G31|1|B|G|48
8G31|1|B|A|49
8G31|1|B|U|50
8G31|1|B|G|51
8G31|1|B|A|52
8G31|1|B|A|53
8G31|1|B|G|54
*
8G31|1|B|C|116
8G31|1|B|G|117
8G31|1|B|A|118
8G31|1|B|A|119
8G31|1|B|U|120
8G31|1|B|G|121
*
8G31|1|B|C|130
8G31|1|B|A|131
*
8G31|1|B|U|148
8G31|1|B|A|149
8G31|1|B|U|150
*
8G31|1|B|A|176
8G31|1|B|G|177
8G31|1|B|G|178

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34