3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
Length
40 nucleotides
Bulged bases
8G31|1|B|A|2062, 8G31|1|B|A|2448, 8G31|1|B|U|2449, 8G31|1|B|U|2585, 8G31|1|B|U|2609, 8G31|1|B|C|2610
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8G31|1|B|G|2057
8G31|1|B|A|2058
8G31|1|B|A|2059
8G31|1|B|A|2060
8G31|1|B|G|2061
8G31|1|B|A|2062
8G31|1|B|C|2063
8G31|1|B|C|2064
*
8G31|1|B|G|2446
8G31|1|B|G|2447
8G31|1|B|A|2448
8G31|1|B|U|2449
8G31|1|B|A|2450
8G31|1|B|A|2451
8G31|1|B|C|2452
8G31|1|B|A|2453
8G31|1|B|G|2454
*
8G31|1|B|C|2498
8G31|1|B|C|2499
8G31|1|B|U|2500
8G31|1|B|C|2501
8G31|1|B|G|2502
8G31|1|B|A|2503
8G31|1|B|U|2504
8G31|1|B|G|2505
8G31|1|B|U|2506
8G31|1|B|C|2507
*
8G31|1|B|G|2582
8G31|1|B|G|2583
8G31|1|B|U|2584
8G31|1|B|U|2585
8G31|1|B|U|2586
8G31|1|B|A|2587
8G31|1|B|G|2588
*
8G31|1|B|C|2606
8G31|1|B|G|2607
8G31|1|B|G|2608
8G31|1|B|U|2609
8G31|1|B|C|2610
8G31|1|B|C|2611

Current chains

Chain B
23S

Nearby chains

Chain 0
50S ribosomal protein L32
Chain 6
GTPase HflX
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22

Coloring options:

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