J5_8G38_004

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8G38|1|B|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G38_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0936

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G38|1|B|G|1674
8G38|1|B|C|1675
8G38|1|B|A|1676
8G38|1|B|A|1677
8G38|1|B|A|1678
8G38|1|B|A|1679
8G38|1|B|U|1680
8G38|1|B|G|1681
8G38|1|B|G|1682
*
8G38|1|B|C|1706
8G38|1|B|G|1707
*
8G38|1|B|U|1751
8G38|1|B|C|1752
*
8G38|1|B|G|1756
8G38|1|B|A|1757
8G38|1|B|U|1758
8G38|1|B|A|1759
8G38|1|B|C|1760
8G38|1|B|C|1761
8G38|1|B|A|1762
8G38|1|B|G|1763
8G38|1|B|C|1764
*
8G38|1|B|G|1988
8G38|1|B|G|1989
8G38|1|B|C|1990

Current chains

Chain B

23S

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain v

Small subunit ribosomal RNA; SSU rRNA