J5_8G4S_002
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CAUG*CGGACGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8G4S|1|2|A|80, 8G4S|1|2|C|336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8G4S_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1404
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8G4S|1|2|C|53
8G4S|1|2|A|54
8G4S|1|2|U|55
8G4S|1|2|G|56
*
8G4S|1|2|C|77
8G4S|1|2|G|78
8G4S|1|2|G|79
8G4S|1|2|A|80
8G4S|1|2|C|81
8G4S|1|2|G|82
8G4S|1|2|G|83
8G4S|1|2|C|84
*
8G4S|1|2|G|298
8G4S|1|2|A|299
8G4S|1|2|G|300
*
8G4S|1|2|C|321
8G4S|1|2|A|322
8G4S|1|2|C|323
*
8G4S|1|2|G|334
8G4S|1|2|G|335
8G4S|1|2|C|336
8G4S|1|2|A|337
8G4S|1|2|G|338
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain J
- Ribosomal protein S9
- Chain Y
- Ribosomal protein S24
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