J5_8G60_005

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

(PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA

Length

19 nucleotides

Bulged bases

8G60|1|L5|G|3922, 8G60|1|L5|A|4376, 8G60|1|L5|G|4377, 8G60|1|L5|A|4378, 8G60|1|L5|A|4379

QA status

Modified nucleotides: PSU, OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G60_005 not in the Motif Atlas

Homologous match to J5_8C3A_006

Geometric discrepancy: 0.3346

The information below is about J5_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G60|1|L5|PSU|3920
8G60|1|L5|U|3921
8G60|1|L5|G|3922
8G60|1|L5|A|3923
*
8G60|1|L5|U|4188
8G60|1|L5|U|4189
8G60|1|L5|U|4190
8G60|1|L5|G|4191
*
8G60|1|L5|C|4204
8G60|1|L5|A|4205
*
8G60|1|L5|OMU|4227
8G60|1|L5|OMG|4228
*
8G60|1|L5|C|4375
8G60|1|L5|A|4376
8G60|1|L5|G|4377
8G60|1|L5|A|4378
8G60|1|L5|A|4379
8G60|1|L5|A|4380
8G60|1|L5|A|4381

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain LN

eL15

Chain LQ

eL18

Chain LT

eL21

Chain La

uL15

Chain Lb

eL29

Chain Lo

eL42