J5_8G61_002

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)

Length

24 nucleotides

Bulged bases

8G61|1|L5|C|2289, 8G61|1|L5|U|2350

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G61_002 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.057

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_63811.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8G61|1|L5|G|1335
8G61|1|L5|G|1336
8G61|1|L5|A|1337
8G61|1|L5|G|1338
8G61|1|L5|U|1339
8G61|1|L5|OMC|1340
*
8G61|1|L5|G|1516
8G61|1|L5|G|1517
8G61|1|L5|A|1518
8G61|1|L5|C|1519
*
8G61|1|L5|G|1658
8G61|1|L5|U|1659
8G61|1|L5|U|1660
8G61|1|L5|C|1661
*
8G61|1|L5|G|2288
8G61|1|L5|C|2289
8G61|1|L5|C|2290
*
8G61|1|L5|G|2345
8G61|1|L5|C|2346
8G61|1|L5|A|2347
8G61|1|L5|G|2348
8G61|1|L5|A|2349
8G61|1|L5|U|2350
8G61|1|L5|OMC|2351

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28