3D structure

PDB id
8G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
(PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
Length
19 nucleotides
Bulged bases
8G6J|1|L5|G|3922, 8G6J|1|L5|A|4376, 8G6J|1|L5|G|4377, 8G6J|1|L5|A|4378, 8G6J|1|L5|A|4379
QA status
Modified nucleotides: PSU, OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8G6J_005 not in the Motif Atlas
Homologous match to J5_8C3A_006
Geometric discrepancy: 0.3006
The information below is about J5_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8G6J|1|L5|PSU|3920
8G6J|1|L5|U|3921
8G6J|1|L5|G|3922
8G6J|1|L5|A|3923
*
8G6J|1|L5|U|4188
8G6J|1|L5|U|4189
8G6J|1|L5|U|4190
8G6J|1|L5|G|4191
*
8G6J|1|L5|C|4204
8G6J|1|L5|A|4205
*
8G6J|1|L5|OMU|4227
8G6J|1|L5|OMG|4228
*
8G6J|1|L5|C|4375
8G6J|1|L5|A|4376
8G6J|1|L5|G|4377
8G6J|1|L5|A|4378
8G6J|1|L5|A|4379
8G6J|1|L5|A|4380
8G6J|1|L5|A|4381

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
uL2
Chain LN
60S ribosomal protein L15
Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29
Chain Lo
60S ribosomal protein L36a

Coloring options:


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