J5_8G6Y_004

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8G6Y|1|a|U|1758, 8G6Y|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G6Y_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0365

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G6Y|1|a|G|1674
8G6Y|1|a|C|1675
8G6Y|1|a|A|1676
8G6Y|1|a|A|1677
8G6Y|1|a|A|1678
8G6Y|1|a|A|1679
8G6Y|1|a|U|1680
8G6Y|1|a|G|1681
8G6Y|1|a|G|1682
*
8G6Y|1|a|C|1706
8G6Y|1|a|G|1707
*
8G6Y|1|a|U|1751
8G6Y|1|a|C|1752
*
8G6Y|1|a|G|1756
8G6Y|1|a|A|1757
8G6Y|1|a|U|1758
8G6Y|1|a|A|1759
8G6Y|1|a|C|1760
8G6Y|1|a|C|1761
8G6Y|1|a|A|1762
8G6Y|1|a|G|1763
8G6Y|1|a|C|1764
*
8G6Y|1|a|G|1988
8G6Y|1|a|G|1989
8G6Y|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19