J5_8G7P_006

3D structure

PDB id

8G7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

8G7P|1|A|U|2076, 8G7P|1|A|G|2428, 8G7P|1|A|G|2429, 8G7P|1|A|A|2430, 8G7P|1|A|U|2431, 8G7P|1|A|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G7P_006 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.1094

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8G7P|1|A|U|2074
8G7P|1|A|U|2075
8G7P|1|A|U|2076
8G7P|1|A|A|2077
*
8G7P|1|A|U|2243
8G7P|1|A|U|2244
8G7P|1|A|U|2245
8G7P|1|A|G|2246
*
8G7P|1|A|C|2258
8G7P|1|A|U|2259
*
8G7P|1|A|A|2281
8G7P|1|A|G|2282
*
8G7P|1|A|C|2427
8G7P|1|A|G|2428
8G7P|1|A|G|2429
8G7P|1|A|A|2430
8G7P|1|A|U|2431
8G7P|1|A|A|2432
8G7P|1|A|A|2433
8G7P|1|A|A|2434
8G7P|1|A|A|2435

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain C

50S ribosomal protein L2

Chain N

50S ribosomal protein L15

Chain Y

50S ribosomal protein L27

Chain Z

50S ribosomal protein L28

Chain y

Transfer RNA; tRNA