J5_8G7P_009

3D structure

PDB id

8G7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8G7P|1|a|A|109, 8G7P|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8G7P_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.128

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8G7P|1|a|C|58
8G7P|1|a|A|59
8G7P|1|a|A|60
8G7P|1|a|G|61
*
8G7P|1|a|C|106
8G7P|1|a|G|107
8G7P|1|a|G|108
8G7P|1|a|A|109
8G7P|1|a|C|110
8G7P|1|a|G|111
8G7P|1|a|G|112
8G7P|1|a|G|113
*
8G7P|1|a|C|314
8G7P|1|a|A|315
8G7P|1|a|C|316
*
8G7P|1|a|G|337
8G7P|1|a|A|338
8G7P|1|a|C|339
*
8G7P|1|a|G|350
8G7P|1|a|G|351
8G7P|1|a|C|352
8G7P|1|a|A|353
8G7P|1|a|G|354

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20