J5_8GHU_002

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAGUCGAA*UGGCGGACGGGU*ACAC*GACUC*GAGGCAG

Length

37 nucleotides

Bulged bases

8GHU|1|a|A|60, 8GHU|1|a|G|64, 8GHU|1|a|A|65, 8GHU|1|a|A|109, 8GHU|1|a|C|352, 8GHU|1|a|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GHU|1|a|C|58
8GHU|1|a|A|59
8GHU|1|a|A|60
8GHU|1|a|G|61
8GHU|1|a|U|62
8GHU|1|a|C|63
8GHU|1|a|G|64
8GHU|1|a|A|65
8GHU|1|a|A|66
*
8GHU|1|a|U|103
8GHU|1|a|G|104
8GHU|1|a|G|105
8GHU|1|a|C|106
8GHU|1|a|G|107
8GHU|1|a|G|108
8GHU|1|a|A|109
8GHU|1|a|C|110
8GHU|1|a|G|111
8GHU|1|a|G|112
8GHU|1|a|G|113
8GHU|1|a|U|114
*
8GHU|1|a|A|313
8GHU|1|a|C|314
8GHU|1|a|A|315
8GHU|1|a|C|316
*
8GHU|1|a|G|337
8GHU|1|a|A|338
8GHU|1|a|C|339
8GHU|1|a|U|340
8GHU|1|a|C|341
*
8GHU|1|a|G|348
8GHU|1|a|A|349
8GHU|1|a|G|350
8GHU|1|a|G|351
8GHU|1|a|C|352
8GHU|1|a|A|353
8GHU|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20