J5_8GLP_009

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UCGCUC*GGG*UG*CCG*CGA

Length

17 nucleotides

Bulged bases

8GLP|1|S2|G|126, 8GLP|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|S2|U|124
8GLP|1|S2|C|125
8GLP|1|S2|G|126
8GLP|1|S2|C|127
8GLP|1|S2|U|128
8GLP|1|S2|C|129
*
8GLP|1|S2|G|183
8GLP|1|S2|G|184
8GLP|1|S2|G|185
*
8GLP|1|S2|U|214
8GLP|1|S2|G|215
*
8GLP|1|S2|C|310
8GLP|1|S2|C|311
8GLP|1|S2|G|312
*
8GLP|1|S2|C|337
8GLP|1|S2|G|338
8GLP|1|S2|A|339

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8