J5_8HFR_001
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8HFR|1|3n|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8HFR_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0581
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|A|20
8HFR|1|1e|G|21
8HFR|1|1e|G|22
*
8HFR|1|3n|C|35
8HFR|1|3n|G|36
8HFR|1|3n|A|37
8HFR|1|3n|U|38
8HFR|1|3n|G|39
8HFR|1|3n|A|40
8HFR|1|3n|A|41
8HFR|1|3n|G|42
*
8HFR|1|3n|U|102
8HFR|1|3n|G|103
8HFR|1|3n|A|104
8HFR|1|3n|A|105
8HFR|1|3n|C|106
8HFR|1|3n|G|107
*
8HFR|1|3n|C|115
8HFR|1|3n|G|116
*
8HFR|1|3n|C|137
8HFR|1|3n|A|138
8HFR|1|3n|U|139
Current chains
- Chain 1e
- 25S ribosomal RNA
- Chain 3n
- 5.8S ribosomal RNA
Nearby chains
- Chain No
- 60S ribosomal protein L15-A
- Chain Xc
- 60S ribosomal protein L25
- Chain h1
- 60S ribosomal protein L35-A
- Chain jh
- 60S ribosomal protein L37-A
- Chain li
- 60S ribosomal protein L39
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