J5_8HFR_002
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8HFR|1|1e|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8HFR_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0782
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8HFR|1|1e|G|658
8HFR|1|1e|G|659
8HFR|1|1e|A|660
8HFR|1|1e|G|661
8HFR|1|1e|U|662
8HFR|1|1e|C|663
*
8HFR|1|1e|G|799
8HFR|1|1e|G|800
8HFR|1|1e|A|801
8HFR|1|1e|C|802
*
8HFR|1|1e|G|941
8HFR|1|1e|U|942
8HFR|1|1e|U|943
8HFR|1|1e|C|944
*
8HFR|1|1e|G|1375
8HFR|1|1e|C|1376
*
8HFR|1|1e|G|1431
8HFR|1|1e|C|1432
8HFR|1|1e|A|1433
8HFR|1|1e|G|1434
8HFR|1|1e|A|1435
8HFR|1|1e|U|1436
8HFR|1|1e|C|1437
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 3n
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DO
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain No
- 60S ribosomal protein L15-A
- Chain aw
- 60S ribosomal protein L28
- Chain eH
- 60S ribosomal protein L32
- Chain rA
- Nucleolar GTP-binding protein 1
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