J5_8HFR_005
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AAAGAAGAC*GAUAACUGGCUUGUGGC*GCUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUU
- Length
- 62 nucleotides
- Bulged bases
- 8HFR|1|1e|G|2400, 8HFR|1|1e|A|2402, 8HFR|1|1e|U|2818, 8HFR|1|1e|A|2819, 8HFR|1|1e|A|2820, 8HFR|1|1e|C|2821, 8HFR|1|1e|U|2822, 8HFR|1|1e|G|2823, 8HFR|1|1e|G|2824, 8HFR|1|1e|U|2860, 8HFR|1|1e|U|2862, 8HFR|1|1e|G|2863, 8HFR|1|1e|C|2867, 8HFR|1|1e|U|2868, 8HFR|1|1e|U|2869, 8HFR|1|1e|C|2870, 8HFR|1|1e|G|2874, 8HFR|1|1e|U|2978, 8HFR|1|1e|U|2980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|A|2397
8HFR|1|1e|A|2398
8HFR|1|1e|A|2399
8HFR|1|1e|G|2400
8HFR|1|1e|A|2401
8HFR|1|1e|A|2402
8HFR|1|1e|G|2403
8HFR|1|1e|A|2404
8HFR|1|1e|C|2405
*
8HFR|1|1e|G|2816
8HFR|1|1e|A|2817
8HFR|1|1e|U|2818
8HFR|1|1e|A|2819
8HFR|1|1e|A|2820
8HFR|1|1e|C|2821
8HFR|1|1e|U|2822
8HFR|1|1e|G|2823
8HFR|1|1e|G|2824
8HFR|1|1e|C|2825
8HFR|1|1e|U|2826
8HFR|1|1e|U|2827
8HFR|1|1e|G|2828
8HFR|1|1e|U|2829
8HFR|1|1e|G|2830
8HFR|1|1e|G|2831
8HFR|1|1e|C|2832
*
8HFR|1|1e|G|2856
8HFR|1|1e|C|2857
8HFR|1|1e|U|2858
8HFR|1|1e|U|2859
8HFR|1|1e|U|2860
8HFR|1|1e|U|2861
8HFR|1|1e|U|2862
8HFR|1|1e|G|2863
8HFR|1|1e|A|2864
8HFR|1|1e|U|2865
8HFR|1|1e|U|2866
8HFR|1|1e|C|2867
8HFR|1|1e|U|2868
8HFR|1|1e|U|2869
8HFR|1|1e|C|2870
8HFR|1|1e|G|2871
8HFR|1|1e|A|2872
8HFR|1|1e|U|2873
8HFR|1|1e|G|2874
8HFR|1|1e|U|2875
8HFR|1|1e|C|2876
*
8HFR|1|1e|G|2950
8HFR|1|1e|G|2951
8HFR|1|1e|G|2952
8HFR|1|1e|U|2953
8HFR|1|1e|U|2954
8HFR|1|1e|U|2955
8HFR|1|1e|A|2956
8HFR|1|1e|G|2957
*
8HFR|1|1e|U|2975
8HFR|1|1e|A|2976
8HFR|1|1e|G|2977
8HFR|1|1e|U|2978
8HFR|1|1e|U|2979
8HFR|1|1e|U|2980
8HFR|1|1e|U|2981
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain B4
- 60S ribosomal protein L2-A
- Chain CD
- 60S ribosomal protein L3
- Chain DO
- 60S ribosomal protein L4-A
- Chain Pv
- 60S ribosomal protein L17-A
- Chain rA
- Nucleolar GTP-binding protein 1
- Chain sm
- Translation machinery-associated protein 16
- Chain vV
- 60S ribosomal export protein NMD3
- Chain xd
- Ribosome biogenesis protein NSA2
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