J5_8HFR_006
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8HFR|1|1e|G|2418, 8HFR|1|1e|A|2799, 8HFR|1|1e|G|2800, 8HFR|1|1e|A|2801, 8HFR|1|1e|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8HFR_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2428
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8HFR|1|1e|U|2416
8HFR|1|1e|U|2417
8HFR|1|1e|G|2418
8HFR|1|1e|A|2419
*
8HFR|1|1e|U|2611
8HFR|1|1e|U|2612
8HFR|1|1e|U|2613
8HFR|1|1e|G|2614
*
8HFR|1|1e|C|2627
8HFR|1|1e|A|2628
*
8HFR|1|1e|U|2650
8HFR|1|1e|G|2651
*
8HFR|1|1e|C|2798
8HFR|1|1e|A|2799
8HFR|1|1e|G|2800
8HFR|1|1e|A|2801
8HFR|1|1e|A|2802
8HFR|1|1e|A|2803
8HFR|1|1e|A|2804
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain B4
- 60S ribosomal protein L2-A
- Chain No
- 60S ribosomal protein L15-A
- Chain Qk
- 60S ribosomal protein L18-A
- Chain Tl
- 60S ribosomal protein L21-A
- Chain aw
- 60S ribosomal protein L28
- Chain mS
- 60S ribosomal protein L42-A
- Chain vV
- 60S ribosomal export protein NMD3
Coloring options: