J5_8HL2_001

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUAUCGG*CGAGUG*CUUUUC*GGAAUAAG*CGAG

Length

31 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|C|37
8HL2|1|A16S|U|38
8HL2|1|A16S|A|39
8HL2|1|A16S|U|40
8HL2|1|A16S|C|41
8HL2|1|A16S|G|42
8HL2|1|A16S|G|43
*
8HL2|1|A16S|C|413
8HL2|1|A16S|G|414
8HL2|1|A16S|A|415
8HL2|1|A16S|G|416
8HL2|1|A16S|U|417
8HL2|1|A16S|G|418
*
8HL2|1|A16S|C|433
8HL2|1|A16S|U|434
8HL2|1|A16S|U|435
8HL2|1|A16S|U|436
8HL2|1|A16S|U|437
8HL2|1|A16S|C|438
*
8HL2|1|A16S|G|458
8HL2|1|A16S|G|459
8HL2|1|A16S|A|460
8HL2|1|A16S|A|461
8HL2|1|A16S|U|462
8HL2|1|A16S|A|463
8HL2|1|A16S|A|464
8HL2|1|A16S|G|465
*
8HL2|1|A16S|C|511
8HL2|1|A16S|G|512
8HL2|1|A16S|A|513
8HL2|1|A16S|G|514

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS4P

30S ribosomal protein S4

Chain S12P

30S ribosomal protein S12