J5_8HL2_002

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAG*CGGACGGC*GUU*AGG*CGCAC

Length

23 nucleotides

Bulged bases

8HL2|1|A16S|A|96, 8HL2|1|A16S|G|363, 8HL2|1|A16S|C|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A16S|G|61
8HL2|1|A16S|G|62
8HL2|1|A16S|A|63
8HL2|1|A16S|G|64
*
8HL2|1|A16S|C|93
8HL2|1|A16S|G|94
8HL2|1|A16S|G|95
8HL2|1|A16S|A|96
8HL2|1|A16S|C|97
8HL2|1|A16S|G|98
8HL2|1|A16S|G|99
8HL2|1|A16S|C|100
*
8HL2|1|A16S|G|326
8HL2|1|A16S|U|327
8HL2|1|A16S|U|328
*
8HL2|1|A16S|A|349
8HL2|1|A16S|G|350
8HL2|1|A16S|G|351
*
8HL2|1|A16S|C|362
8HL2|1|A16S|G|363
8HL2|1|A16S|C|364
8HL2|1|A16S|A|365
8HL2|1|A16S|C|366

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS4E

30S ribosomal protein S4e

Chain AS6E

30S ribosomal protein S6e

Chain AS8E

30S ribosomal protein S8e

Chain L14P

50S ribosomal protein L14