J5_8HL2_003

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCCAAAC*GUGUUACGA*UAGAGUAC*GGAAGUUAGG*UCUAAGG

Length

41 nucleotides

Bulged bases

8HL2|1|A23S|C|292, 8HL2|1|A23S|U|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A23S|C|246
8HL2|1|A23S|C|247
8HL2|1|A23S|C|248
8HL2|1|A23S|A|249
8HL2|1|A23S|A|250
8HL2|1|A23S|A|251
8HL2|1|A23S|C|252
*
8HL2|1|A23S|G|286
8HL2|1|A23S|U|287
8HL2|1|A23S|G|288
8HL2|1|A23S|U|289
8HL2|1|A23S|U|290
8HL2|1|A23S|A|291
8HL2|1|A23S|C|292
8HL2|1|A23S|G|293
8HL2|1|A23S|A|294
*
8HL2|1|A23S|U|414
8HL2|1|A23S|A|415
8HL2|1|A23S|G|416
8HL2|1|A23S|A|417
8HL2|1|A23S|G|418
8HL2|1|A23S|U|419
8HL2|1|A23S|A|420
8HL2|1|A23S|C|421
*
8HL2|1|A23S|G|442
8HL2|1|A23S|G|443
8HL2|1|A23S|A|444
8HL2|1|A23S|A|445
8HL2|1|A23S|G|446
8HL2|1|A23S|U|447
8HL2|1|A23S|U|448
8HL2|1|A23S|A|449
8HL2|1|A23S|G|450
8HL2|1|A23S|G|451
*
8HL2|1|A23S|U|463
8HL2|1|A23S|C|464
8HL2|1|A23S|U|465
8HL2|1|A23S|A|466
8HL2|1|A23S|A|467
8HL2|1|A23S|G|468
8HL2|1|A23S|G|469

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L7A1

50S ribosomal protein L7Ae