Loop J5_8HL2

3D structure

PDB id: 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Loop

Sequence: AGAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGACU
Length: 37 nucleotides
Bulged bases: 8HL2|1|A23S|A|2572, 8HL2|1|A23S|U|2573, 8HL2|1|A23S|U|2628, 8HL2|1|A23S|A|2733
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8HL2|1|A23S|A|2186
8HL2|1|A23S|G|2187
8HL2|1|A23S|A|2188
8HL2|1|A23S|A|2189
8HL2|1|A23S|G|2190
8HL2|1|A23S|A|2191
8HL2|1|A23S|C|2192
8HL2|1|A23S|C|2193
*
8HL2|1|A23S|G|2570
8HL2|1|A23S|G|2571
8HL2|1|A23S|A|2572
8HL2|1|A23S|U|2573
8HL2|1|A23S|A|2574
8HL2|1|A23S|A|2575
8HL2|1|A23S|C|2576
8HL2|1|A23S|A|2577
*
8HL2|1|A23S|U|2624
8HL2|1|A23S|C|2625
8HL2|1|A23S|G|2626
8HL2|1|A23S|A|2627
8HL2|1|A23S|U|2628
8HL2|1|A23S|G|2629
8HL2|1|A23S|U|2630
8HL2|1|A23S|C|2631
*
8HL2|1|A23S|G|2706
8HL2|1|A23S|G|2707
8HL2|1|A23S|U|2708
8HL2|1|A23S|U|2709
8HL2|1|A23S|U|2710
8HL2|1|A23S|A|2711
8HL2|1|A23S|G|2712
*
8HL2|1|A23S|C|2730
8HL2|1|A23S|G|2731
8HL2|1|A23S|G|2732
8HL2|1|A23S|A|2733
8HL2|1|A23S|C|2734
8HL2|1|A23S|U|2735

Current chains

Chain A23S: 23s rRNA (3000-MER)

Nearby chains

Chain AL2P: 50S ribosomal protein L2
Chain AL3P: 50S ribosomal protein L3
Chain AL4P: 50S ribosomal protein L4
Chain APTN: Transfer RNA; tRNA
Chain APTP: PHE-PHE-PHE-PHE-PHE-PHE

J5_8HL2_007