J5_8HL4_005

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGAG*CAUAG*CAAGU*AG*UGAAG

Length

21 nucleotides

Bulged bases

8HL4|1|A23S|A|787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HL4_005 not in the Motif Atlas

Homologous match to J5_4V9F_004

Geometric discrepancy: 0.2378

The information below is about J5_4V9F_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43592.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8HL4|1|A23S|C|697
8HL4|1|A23S|G|698
8HL4|1|A23S|A|699
8HL4|1|A23S|G|700
*
8HL4|1|A23S|C|724
8HL4|1|A23S|A|725
8HL4|1|A23S|U|726
8HL4|1|A23S|A|727
8HL4|1|A23S|G|728
*
8HL4|1|A23S|C|735
8HL4|1|A23S|A|736
8HL4|1|A23S|A|737
8HL4|1|A23S|G|738
8HL4|1|A23S|U|739
*
8HL4|1|A23S|A|769
8HL4|1|A23S|G|770
*
8HL4|1|A23S|U|785
8HL4|1|A23S|G|786
8HL4|1|A23S|A|787
8HL4|1|A23S|A|788
8HL4|1|A23S|G|789

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L15P

50S ribosomal protein L15

Chain L18E

50S ribosomal protein L18e