3D structure

PDB id
8IFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-bound E.coli 70S ribosome in the PURE system
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
8IFC|1|a|A|532, 8IFC|1|a|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8IFC_005 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0444
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8IFC|1|a|C|531
8IFC|1|a|A|532
8IFC|1|a|G|533
*
8IFC|1|a|C|560
8IFC|1|a|G|561
8IFC|1|a|U|562
8IFC|1|a|A|563
8IFC|1|a|C|564
*
8IFC|1|a|G|577
8IFC|1|a|G|578
8IFC|1|a|G|579
*
8IFC|1|a|C|1261
8IFC|1|a|A|1262
*
8IFC|1|a|U|2017
8IFC|1|a|G|2018

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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