J5_8IFD_005
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8IFD|1|1A|G|3922, 8IFD|1|1A|A|4376, 8IFD|1|1A|G|4377, 8IFD|1|1A|A|4378, 8IFD|1|1A|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IFD_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.1115
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|1A|U|3920
8IFD|1|1A|U|3921
8IFD|1|1A|G|3922
8IFD|1|1A|A|3923
*
8IFD|1|1A|U|4188
8IFD|1|1A|U|4189
8IFD|1|1A|U|4190
8IFD|1|1A|G|4191
*
8IFD|1|1A|C|4204
8IFD|1|1A|A|4205
*
8IFD|1|1A|U|4227
8IFD|1|1A|G|4228
*
8IFD|1|1A|C|4375
8IFD|1|1A|A|4376
8IFD|1|1A|G|4377
8IFD|1|1A|A|4378
8IFD|1|1A|A|4379
8IFD|1|1A|A|4380
8IFD|1|1A|A|4381
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2H
- 60S ribosomal protein L15
- Chain 2K
- 60S ribosomal protein L18
- Chain 2N
- 60S ribosomal protein L21
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2V
- 60S ribosomal protein L29
- Chain 2i
- 60S ribosomal protein L36a
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