J5_8IFE_007
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8IFE|1|2m|A|92, 8IFE|1|2m|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IFE_007 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0596
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IFE|1|2m|C|53
8IFE|1|2m|A|54
8IFE|1|2m|U|55
8IFE|1|2m|G|56
*
8IFE|1|2m|C|89
8IFE|1|2m|G|90
8IFE|1|2m|A|91
8IFE|1|2m|A|92
8IFE|1|2m|U|93
8IFE|1|2m|G|94
8IFE|1|2m|G|95
8IFE|1|2m|C|96
*
8IFE|1|2m|G|434
8IFE|1|2m|A|435
8IFE|1|2m|G|436
*
8IFE|1|2m|C|457
8IFE|1|2m|A|458
8IFE|1|2m|C|459
*
8IFE|1|2m|G|470
8IFE|1|2m|G|471
8IFE|1|2m|C|472
8IFE|1|2m|A|473
8IFE|1|2m|G|474
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2P
- 60S ribosomal protein L23
- Chain 2q
- 40S ribosomal protein S4, X isoform
- Chain 2t
- 40S ribosomal protein S8
- Chain 3H
- 40S ribosomal protein S6
- Chain 3I
- 40S ribosomal protein S9
- Chain 3N
- 40S ribosomal protein S24
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