3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
Length
24 nucleotides
Bulged bases
8INE|1|2|C|2289, 8INE|1|2|U|2350
QA status
Modified nucleotides: 2MG, I4U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8INE_002 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.1064
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8INE|1|2|G|1335
8INE|1|2|G|1336
8INE|1|2|A|1337
8INE|1|2|G|1338
8INE|1|2|U|1339
8INE|1|2|C|1340
*
8INE|1|2|G|1516
8INE|1|2|2MG|1517
8INE|1|2|A|1518
8INE|1|2|C|1519
*
8INE|1|2|G|1658
8INE|1|2|I4U|1659
8INE|1|2|U|1660
8INE|1|2|C|1661
*
8INE|1|2|G|2288
8INE|1|2|C|2289
8INE|1|2|C|2290
*
8INE|1|2|G|2345
8INE|1|2|C|2346
8INE|1|2|A|2347
8INE|1|2|G|2348
8INE|1|2|A|2349
8INE|1|2|U|2350
8INE|1|2|C|2351

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain D
60S ribosomal protein L4
Chain L
60S ribosomal protein L27a
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15
Chain k
60S ribosomal protein L32
Chain l
60S ribosomal protein L28

Coloring options:


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