J5_8IP8_001
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGCGG*CGAUGAAG*UGAACG*CG*CACGC
- Length
- 26 nucleotides
- Bulged bases
- 8IP8|1|SB|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IP8|1|RB|G|17
8IP8|1|RB|G|18
8IP8|1|RB|C|19
8IP8|1|RB|G|20
8IP8|1|RB|G|21
*
8IP8|1|SB|C|35
8IP8|1|SB|G|36
8IP8|1|SB|A|37
8IP8|1|SB|U|38
8IP8|1|SB|G|39
8IP8|1|SB|A|40
8IP8|1|SB|A|41
8IP8|1|SB|G|42
*
8IP8|1|SB|U|102
8IP8|1|SB|G|103
8IP8|1|SB|A|104
8IP8|1|SB|A|105
8IP8|1|SB|C|106
8IP8|1|SB|G|107
*
8IP8|1|SB|C|115
8IP8|1|SB|G|116
*
8IP8|1|SB|C|139
8IP8|1|SB|A|140
8IP8|1|SB|C|141
8IP8|1|SB|G|142
8IP8|1|SB|C|143
Current chains
- Chain RB
- 60S ribosomal RNA
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain BB
- 60S ribosomal protein uL29
- Chain HA
- 60S ribosomal protein eL15
- Chain NA
- 60S ribosomal protein uL23
- Chain UA
- 60S ribosomal protein eL37
- Chain VA
- 60S ribosomal protein eL39
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