J5_8IP8_002
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8IP8|1|RB|U|1439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IP8_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0486
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8IP8|1|RB|G|662
8IP8|1|RB|G|663
8IP8|1|RB|A|664
8IP8|1|RB|G|665
8IP8|1|RB|U|666
8IP8|1|RB|C|667
*
8IP8|1|RB|G|802
8IP8|1|RB|G|803
8IP8|1|RB|A|804
8IP8|1|RB|C|805
*
8IP8|1|RB|G|944
8IP8|1|RB|U|945
8IP8|1|RB|U|946
8IP8|1|RB|C|947
*
8IP8|1|RB|G|1379
8IP8|1|RB|C|1380
*
8IP8|1|RB|G|1434
8IP8|1|RB|C|1435
8IP8|1|RB|A|1436
8IP8|1|RB|G|1437
8IP8|1|RB|A|1438
8IP8|1|RB|U|1439
8IP8|1|RB|C|1440
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain EB
- 60S ribosomal protein uL4
- Chain HA
- 60S ribosomal protein eL15
- Chain IA
- 60S ribosomal protein uL15
- Chain KB
- 60S ribosomal protein eL13
- Chain QA
- 60S ribosomal protein eL28
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain TA
- 60S ribosomal protein eL32
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